[PyMOL] util.cbc

2015-03-13 Thread Jordan Willis
Hi everyone This has always bugged me a bit, but how do I color by chain if I have two of the same models loaded in? For instance, if they have the same chain designation, util.cbc(obj01) and util.bc(obj02) will color them with the same scheme. I assumed it was the “first_color” command, but it

Re: [PyMOL] Assign secondary structure on group

2015-03-13 Thread Thomas Holder
The latest update to SVN fixes this. Cheers, Thomas Thomas Holder wrote, On 03/06/15 15:35: > Hi Matt, > > thanks for the bug report. If you use the command line instead, it > works if you put the group name in parenthesis, which forces PyMOL to > treat it as an atom selection: > > PyMOL> dss

Re: [PyMOL] green rings

2015-03-13 Thread Thomas Holder
The latest update to SVN fixes the ring color problem. Cheers, Thomas H. Adam Steinberg wrote, On 03/10/15 10:39: > Thank you! > >> On Mar 10, 2015, at 9:07 AM, Thomas Holder >> wrote: >> >> Hi Quentin, Adam, David, Francis, >> >> I just looked at the code, color is hardcoded if "ring_color"

[PyMOL] Recent changes to SVN

2015-03-13 Thread Thomas Holder
Hi everyone, the latest updates to the Open-Source SVN repository introduce some experimental changes under the hood and a lot of code refactoring. If you enjoy checking out the latest code, we appreciate your testing and your feedback. We ported the "scenes" feature from Python to C++. This fixe

Re: [PyMOL] PyMOL installation on Windows 7

2015-03-13 Thread Christoph Gohlke
Looks like pip is not installed correctly or your PYTHONPATH wrong (unset it). To install pymol from wheels for Python 2.7 64 bit installed at C:\Python27, download the following files: pip-6.0.8-py2.py3-none-any.whl numpy-1.9.2+mkl-cp27-none-win_amd64.whl Pmw-2.0.0-py2-none-any.whl

Re: [PyMOL] PyMOL installation on Windows 7

2015-03-13 Thread Brenton Horne
Oh, I have something else. Running in command prompt in admin mode I receive this error when running these whl installation commands: Traceback (most recent call last): File "C:\Python27\lib\runpy.py", line 162, in _run_module_as_main "__main__", fname, loader, pkg_name) File "C:\Python2

[PyMOL] PyMOL installation on Windows 7

2015-03-13 Thread Brenton Horne
Hi, I have tried installing PyMOL via pip & wheel files (found here http://www.lfd.uci.edu/~gohlke/pythonlibs/#pymol) using python 2.7.9 and while no obvious errors occurred during the execution of the |pip install ...| commands I have no new files in |C:\Python27|, my python directory. I hav