[PyMOL] XYZ format - max size of the name field

2015-09-02 Thread Pawe? Gniewek
Hi, I'm trying to read a large file in XYZ format. By default the first line is the number of atoms in the file. The other lines are giving the name and the coordinates for each atom: I've noticed that when the name of the atom is longer than 4 characters, I cannot select that atom - or it's

[PyMOL] Unable to import fragment

2015-09-02 Thread Pablo Garay
Hi, Running PyMOL from this python script: import __main__ __main__.pymol_argv = ['pymol','-qc'] import pymol from pymol import cmd, stored pymol.finish_launching() cmd.fab('BCSDZ', 'pose', resi=0, ss=2) I get this error message: Error: unable to load fragment 'ace'. Traceback (most recent ca