[PyMOL] CGO segmentation fault

2015-10-23 Thread Tsjerk Wassenaar
Hi Thomas, Not sure if I ever reported this already, but when cmd.load_cgo gets an argument that is not a list of values, Pymol (1.7.4.0 incentive, Mac) halts with a segmentation fault. I know it's my bad for feeding a still nested list, but a segmentation fault is a harsh way of complaining :)

Re: [PyMOL] CGO segmentation fault

2015-10-23 Thread Thomas Holder
Hi Tsjerk, Thanks for reporting, we'll look into that. Cheers, Thomas On 23 Oct 2015, at 05:14, Tsjerk Wassenaar wrote: > Hi Thomas, > > Not sure if I ever reported this already, but when cmd.load_cgo gets an > argument that is not a list of values, Pymol (1.7.4.0

Re: [PyMOL] pdbml

2015-10-23 Thread Arthur Zalevsky
Hi Thomas, thank you very much for help. Since PDB made pdbml default for large systems (i'm particularly interested in ribosomes) it was a kind of pain. And it seems i have to upgrade my PyMOL and read documentation more often: help for fetch in PyMOL from svn shows '{default: cif (default

Re: [PyMOL] pdbml

2015-10-23 Thread Arthur Zalevsky
Hi John, Yeah, i know about limitations of PDB format. I've missed the news you mentioned so it was a kind of surprise when i found ribosome pdbs superseded by merged pdbml. So basically j'm just a bit outdated and updating of once established pipelines is always a bit frustrating. Thanks