Hi Thomas,
Movie won't work since the session files are distributed and need to be
interactive. I'll try Jared's solution, if that does not work could we treat
this as an enhancement request?
Cheers,
Carsten
-Original Message-
From: Thomas Holder [mailto:thomas.hol...@schrodin
Thanks, I’ll give that a shot. Let’s see how well that extends into sessions.
From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu]
Sent: Monday, March 07, 2016 1:26 PM
To: Schubert, Carsten [JRDUS]
Cc: pymol-users
Subject: Re: [PyMOL] How to store matrix settings for individual scenes?
Hi C
Hi Carsten,
What's your use case? Since movie frames can store object matrices, would
creating an actual movie solve your problem? Example of an animated
superposition:
# get sample data
fetch 1hbb, async=0
split_chains
delete 1hbb
# set up movie frames
mset 1x100
# make "align" modify the mo
I think this is related to the question about view setting. I rewrote the png
command (see below) to simultaneously output my image, but also output the
entire matrix and viewport with same name as the image but with filetype .vew.
That file can then be run with “@“ to recall the view. The ou
Hi Carsten -
Could you wrap the `scene` function and include storing/recalling of the
matrices as well as the scenes? I just whipped together the following:
```
from pymol import stored
from pymol import cmd
stored.scene_matrices = {}
def scene_store(scn):
obj_matrices = {}
# only stor
Yeah, but not my preferred choice. Tried to do this the elegant way, but
bumping up against Pymol's limits unless Thomas has a workaround.
From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu]
Sent: Monday, March 07, 2016 12:15 PM
To: Schubert, Carsten [JRDUS]
Cc: pymol-users@lists.sourcefor
Hi Carsten -
I'd probably create new objects and use those for superimposition, rather than
moving the originals. That would leave your scenes intact.
Cheers,
Jared
--
Jared Sampson
Columbia University
On Mar 7, 2016, at 12:10 PM, Schubert, Carsten [JRDUS]
mailto:cschu...@its.jnj.com>> wrote
Hi,
I am trying to create a session file of a multimeric protein, in which each
monomer is displayed first using the original matrix settings broken out into
individual scenes. After that all monomers are overlayed on top of each other
and the superposition matrices are copied and applied to t
Hi Joachim,
Are the graphics drivers (both Intel and AMD) up-to-date? Such crashes are
almost always graphics driver related. Note that only one of the two graphics
cards will be active for PyMOL, depending on your setup (performance vs.
power-saving).
Cheers,
Thomas
On 07 Mar 2016, at 11:0
Dear all,
I just got a used DELL LATITUDE 3540. It got an Intel and an AMD graphics at
1605x1050.
I installed PyMOL-v1.8.0.6-Win32.msi.
But on start there is only flash up the cmd windows and that it was. The MS
error dialog pops up.
So I tried PyMOL-v1.7.0.5-Win32.msi, but all the same.
Mit
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