Hi, I have found that with this settings the rendering keeps always white
the interior color.
fetch 1c0k, async=0
as spheres,
clip near , -50
set ray_interior_color, pink
set direct,off
set spec_direct,1
set light_count, 1
ray
If you change the light_count to 2 or try to shut down spec_direct, th
Hi,
Is there an option to show the ribbon as dashed or dotted lines in pymol?
Thanks,
Yang
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Hi Yang,
Yes, since PyMOL 1.8.2 there is "cartoon dash". e.g.:
fetch 1ubq, async=0
as cartoon
cartoon dash
See also:
https://pymolwiki.org/index.php/Cartoon#USAGE
Cheers,
Thomas
> On Apr 19, 2018, at 12:54 PM, Yang Su wrote:
>
> Hi,
>
> Is there an option to show the ribbon as dashed or d
Hi,
Is it possible to start multiple independent pymol backend processes in a
python script/jupyter notebook? Now with PyMOL 2.1 I can 'import pymol' and
call a pymol.cmd function to start a backend process, but this is kind of
'global'. I'm looking for a way to manage multiple PyMOL sessions in
p
Thanks for the tip, Thomas. 'cartoon dash' works with cartoon
representation, but doesn't seem to affect the ribbon representation. For
some use cases I like the 'cornered' ribbon representation better than the
smooth cartoon representation, but cartoon is still a good alternative if
it is not poss
Also, 'cartoon dash' and 'cartoon loop' render beta-strands differently, so
I can't combine the two and get a consistent look and feel. The use case is
to show regions of the structure as dashed line to indicate 'not covered in
study'. I can't use different colors for this purpose because color cod
Hi Yang,
That's an interesting observation, I wasn't aware that cartoon dash and loop
may be traced differently. Apparently the "cartoon_flat_sheets" setting only
applies to dash, not loop. Turning it off will make them follow the same path:
set cartoon_flat_sheets, 0
Cheers,
Thomas
> On Ap
I see. It would be nice to have the cartoon_flat_sheets effect on the loop
and tube variants, too. I like the looks of it. Maybe in a future version
:-)
Thanks,
Yang
On Thu, Apr 19, 2018 at 4:30 PM, Thomas Holder <
thomas.hol...@schrodinger.com> wrote:
> Hi Yang,
>
> That's an interesting observ