[PyMOL] molmol to pymol

2021-05-10 Thread Yanan He
Hi All, How can I convert MOLMOL format coordinates to PYMOL format? The reason for me to do this is because I need to deposit my MOLMOL aligned NMR ensemble to PDB, but it is not recognized by PDB for the format difference. Any help will be very helpful, thanks. Yanan

Re: [PyMOL] PyMOL 2.5 released

2021-05-10 Thread Jarrett Johnson
Hi, Open-source features are typically added on a rolling basis as they're implemented (for example, support for curved helices have been in open source since last October), so many of the features listed here (the non-Incentive Only ones) should have already applied. If they aren't, feel free to

Re: [PyMOL] PyMOL 2.5 released

2021-05-10 Thread Stephen P. Molnar
very good. When will this migrate to github.com/schrodinger/pymol-open-source.git? On 05/10/2021 12:27 PM, Jarrett Johnson wrote: Greetings, We are happy to announce the release of PyMOL 2.5. Download ready-to-use bundles from https://pymol.org/ or update your installation with "conda

[PyMOL] PyMOL 2.5 released

2021-05-10 Thread Jarrett Johnson
Greetings, We are happy to announce the release of PyMOL 2.5. Download ready-to-use bundles from https://pymol.org/ or update your installation with "conda install -c schrodinger pymol". New features include: - Multiple-level undo for PyMOL actions (Incentive Only) - Curved cartoon cylindrical

Re: [PyMOL] Cartoon_transparency

2021-05-10 Thread Criss Hartzell
Transparency mode solves it. Thanks. On Sat, May 8, 2021 at 2:41 PM Jarrett Johnson < jarrett.john...@schrodinger.com> wrote: > Hi Criss, > > It doesn't appear to be broken from what I see. Helices may not appear > transparent to each other if you're using single-layer transparency by > default.