[PyMOL] cgo_triangle problem

2004-08-31 Thread Amit Chourasia
Hello Folks, I am trying to make triangles using cgo objects Here is the code, this does not work * from pymol.cgo import * from pymol import cmd obj = [] obj.extend( [ TRIANGLE, 0.0, 0.0, 0.0, #vertex 1 1.0, 0.0, 0.0, #vertex 2 0.0, 0.0, 1.0,

RE: [PyMOL] 3d plotting in pymol

2004-08-30 Thread Amit Chourasia
according to coordinate, b-factor, whatever. But I hope this will do for now :) Good luck, Tsjerk Amit Chourasia wrote: >Tsjerk, >This is what I tried > >1) load a small pdb files (10 atoms) >2) run graph.py >3) graph all, star, 1, 0.10,[1,0,0], >[0,0,1],[[1,0,0],[0,1

RE: [PyMOL] 3d plotting in pymol

2004-05-24 Thread Amit Chourasia
* Is this something to do with the end of line? Need to use special character for line continuation when line is broken into several lines? Please let me know Thanks --Amit -Original Message- From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-ad...

RE: [PyMOL] 3d plotting in pymol

2004-05-24 Thread Amit Chourasia
orks on the original shape centered around the origin (before translation to the point of the atom from the selection). Hope this already works a bit as wanted. I'll be trying to make it a bit better in the future ;) Cheers, Tsjerk Amit Chourasia wrote: >Tsjerk, > >Great I'll

[PyMOL] Pymol Scalabity - max atom display limit

2004-05-17 Thread Amit Chourasia
I am trying to use PyMol for doing viz on Nano scale structures which have very different bonding structures than protiens,etc. So I will not be using any bond generation algorithms. I provide connect info with atoms info in pdb files which seems to be doing good. I have a very general question.I

[PyMOL] 3d plotting in pymol

2004-05-12 Thread Amit Chourasia
Hi, I am trying to use pymol as a 3d plotting tool. I have few questions 1)Is there a way to add represenation in pymol. ? For instance I would like to see the atom as a triangle or nhedron. I was going through CGO objects that looks promising to what I want to accomplish. What I am looking for i