Re: [PyMOL] Ray tracing - distinction between inside and outside of binding pocket

On 23/8/2011, at 11:02 a.m., Jason Vertrees wrote: Hi Ben, This isn't yet available. PyMOL only support inside and outside color on surface objects (surfaces from maps), not surface representations (what we typically consider a surface). I'll let you know if this changes. Thanks Jason.

[PyMOL] Ray tracing - distinction between inside and outside of binding pocket

Hi, Having prepared and superimposed the binding pockets that I spoke of in my earlier email, I'm now trying to come up with a way of producing high resolution images of them. The problem I'm now facing is that I can't seem to come up with a high-res rendering that clearly distinguishes

[PyMOL] Retrieving the contents of named selections from a saved PyMOL session

Hi list, I'm wondering if anyone could advise me on this question. Basically, I have three separate saved PyMOL sessions (*.pse files). Each of these has a bunch of named selections, which it took me several hours to define properly. I would like to superimpose the proteins in the different

[PyMOL] How to construct a view showing only a single contiguous cavity

Hi all, Thanks to Michael and Jason for their suggestions. I apologise for starting a new thread; I had inadvertently deleted the email conversation. I looked into hollow, but since the binding pocket is large and very irregularly shaped, it seemed as though it would be tricky to include the

[PyMOL] How to construct a view showing only a single contiguous cavity

Hi list, I'm trying to use PyMOL to construct an image of the total contiguous contact surface that starts at a particular place on the surface of a protein, without all the visual distraction and clutter that comes from other regions of the protein surface (not to mention internal cavities). I