[PyMOL] Pymol hangs out...

2009-09-10 Thread Carlos Ríos Vera
Hello Pymol users coders, I'm trying to make a class where I align two structures, it works, but I got an (for me) unusual behavior when I use the class twice. I have the next code: import __main__ __main__.pymol_argv = [ 'pymol', '-qc'] # Quiet and no GUI import pymol import sys, time, os

Re: [PyMOL] RMS

2009-08-29 Thread Carlos Ríos Vera
2009/8/29 David Hall dwash59_2...@yahoo.com pymol.cmd.align(%s % name_struct1, %s % name_struct2) oh, thanks =) should return a list, the first element of which is the rms, if I remember correctly. Warren can probably say what the rest of the elements are. On this note, maybe we could