Re: [PyMOL] selection of residues in protein using plane perpendicular to Z-axis

Thanks Jared for your reply. I apologize for not clear. I want to use the plane to select the residues of interest in protein. Best Regards, Divya From: Jared Sampson Sent: Tuesday, April 23, 2019 9:27 PM To: Divya Kaur Matta Cc: pymol-users Subject: Re

[PyMOL] selection of residues in protein using plane perpendicular to Z-axis

Hi all, I wanted to ask how to select a plane (perpendicular to zaxis) so that I can select all residues of interest in a protein. Any help is greatly appreciated. Best Regards, Divya ___ PyMOL-users mailing list Archives: http://www.mail-archive.com

Re: [PyMOL] Slice

AM To: Divya Kaur Matta Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Slice Hi Divya, I can confirm that slices don't work properly with some map formats (those which define a transformation matrix). What's the file format (file extension) of your map? Cheers, Thomas &

Re: [PyMOL] Slice

Dear Thomas , Thank you so much for your suggestion. I will try this. I appreciate your help. Best Regards Divya Get Outlook for iOS<https://aka.ms/o0ukef> From: Thomas Holder Sent: Friday, August 17, 2018 11:05 AM To: Divya Kaur Matta Cc: pymol

[PyMOL] Slice

Dear all, I would like to use the "Isomesh" and "Slice" command for the protein I am working on to get the electrostatic potential map of that protein. For that , it requires map. I have got Delphi map for that. When I use the commands below, I got the mesh that aligns with the atoms of the pd

[PyMOL] Problem in slice plane visualization of protein

Dear Pymol users, I have a Delphi potential map for the protein. I would like to have a slice plane for this protein. When I use mesh command, it easily aligns with the atoms of the PDB and shows the positive and negative potential. However, there is a problem with the alignment of atoms by usi