Re: [PyMOL] Running PyMol (Linux) on Chromebook

> I assume this input on the (base) environment line indicated within the > instalpython3.com/chromebook > instructions. This one. This is the command line terminal for instructions to send to the computer. Not to be confused with the Python Interpreter

Re: [PyMOL] AutoDock plugin error

Enrique, I don’t know a lot about AutoDock, but I do know a lot about python. That error comes from using a new versions of numpy (1.14) that does not have old numeric with it anymore (deprecated in 1.9). You can do a few things. Run the script within pymol which uses a earlier release of n

Re: [PyMOL] Copy object distorts cartoon backbone.

I’m so sorry to spam. The answer is set cartoon_smooth_loops 1 Jordan > On Aug 24, 2017, at 2:24 PM, J.R. W wrote: > > I have a trimeric structure. It looks great when I show it in a cartoon > object. As soon as I copy one of the chains to an object, the backbone > immediatel

[PyMOL] Copy object distorts cartoon backbone.

I have a trimeric structure. It looks great when I show it in a cartoon object. As soon as I copy one of the chains to an object, the backbone immediately distorts. The residues perfectly align with the parent object. Does anyone know what’s happening? Can I copy the representation of the parent

Re: [PyMOL] which PyMOL to open?

I think Tcl-Tk GUI + Console is the most familiar pymol. Jordan > On Apr 21, 2017, at 3:06 PM, Jed Goldstone wrote: > > The 3D stuff (Zalman, etc) is only if you're using 3D glasses. I typically > use the Tk + console option that opens two windows (the GUI and a pythonesque > console). > > J

[PyMOL] Set fullscreen and grid mode in batch script

Hi, What I’d like to do is set_grid_mode_1, ray trace, and then output a png in batch mode (-c) However if you code this in the .pml: set_grid_mode, 1 set grid_slot, 2, object2 set grid_slot, 1, object1 viewport 1000,1000 #not sure how to get fullscreen this maybe OS specific ray 1000,1000 p