[PyMOL] Builder Question

Hello All, How physiological are the structures that are produced from builder? Meaning, how are the angles, etc. determined? Might such a resulting structure mimic a chemically-synthesized peptide? I have taken peptides I created using builder and done some MD simulations and the

Re: [PyMOL] Builder Question

[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Jim Nettles Sent: Monday, August 15, 2005 8:56 AM To: James R. Graham Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Builder Question Hello James, There is really a lot of room for discussion regarding your questions. Considering

[PyMOL] Creating PDB files from Primary Sequence

Hello, This may be slightly off-topic, but I was wondering whether PyMol would allow one to enter a peptide sequence (generally short in length) to create a template structure that can then be used for structural refinements (minimizations, etc.) elsewhere. If PyMol cannot do this, is

Re: [PyMOL] Creating PDB files from Primary Sequence

Thanks for the prompt responses, Warren and Joe! Works like a charm! Now, I just wish that my Kensington Expert Mouse could function as a true three button mouse...is there a keystroke that mimics the third mouse button? Thanks again, james

[PyMOL] MacPyMOL and USB controllers

hello all, i am trying to use an external USB device (belkin's nostromo52) to map keystrokes for use in MacPyMOL. However, it seems that MacPyMOL v.0.95 does not allow this while the native os x version 0.93 does. any suggestions on how to get this to work would be greatly appreciated!