Re: [PyMOL] homology modeling in python

2009-06-30 Thread Marcus Collins
Hi Buz (and everyone) The biopython package together with Bizkit (http://biskit.pasteur.fr/) claim to be able to do this sort of thing (see: http://biskit.pasteur.fr/use/workflows/homology-modelling) , and will chew up your processor rather than someone else's! Marcus Collins

[PyMOL] Viewing cavities?

2005-11-01 Thread Marcus Collins
Hello all, The surface rendering in PyMOL is quite nice, but I cannot separate the branches of the surface. That is, I would like to view a large cavity inside of a protein independently from the outer, solvent accessible surface. Is anyone aware of a means to do this? Marcus Collins