Re: [PyMOL] apbs: program locations

Hi Michael, if you haven't figured it out yet, this thread might help you: https://sourceforge.net/p/pymol/mailman/pymol-users/thread/EAA6862A-4914-483F-A12F-92B5A1E81233%40schrodinger.com/ It can be done in the configuration file of the plugin. Best regards! Matic On 1. 06. 22 05:26,

Re: [PyMOL] Failed to create menu's

Hi everybody, we got the same error (Failed to create menus) on Windows 10. We selected 'Ignore' and Pymol 2.1.1 was unable to start successfully. We had to find the .exe in the installation folder since there was no shortcut, as mentioned before. In our case the solution was to: 1.

Re: [PyMOL] Using the APBS Plugin

Dear Kanishk, they shouldn't be empty and you should install the software first. I have never done it on Mac but I suppose it is no different than for Windows and linux. Do not forget to register (see here and

Re: [PyMOL] LISICA Asks for License Module

Dear Stephen, an alternative to get help is to either use the Help forum or write to the author whose email is also available on the Help forum. I am not a user of Lisica specifically so I cannot help you directly. Kind regards, Matic On 26. 01. 2017 15:35, S.

Re: [PyMOL] Autosave session Pymol

Dear PyMOL users, I would just like to bump this question again. I would be glad to see some replies either from users or developers. Best regards, Matic On 31. 03. 2016 08:02, Matic Kisovec wrote: > Dear Pymol users, > > a quick google search returned empty regarding the ability

Re: [PyMOL] Text Font size

Dear Abhinav, in Pymol version 1.8.0 under Settings>GUI Font Size you can set the GUI Font Size. Unfortunately this does not affect the fonts in the graphics window as far as I know. Kind regards, Matic On 06. 04. 2016 18:01, Kumar, Abhinav wrote: Hi, Is there some way to change the font

[PyMOL] Autosave session Pymol

Dear Pymol users, a quick google search returned empty regarding the ability of Pymol to autosave the session at a specified time interval. The feature is available in different programs from text to vector editors etc. I would find it useful to have the ability to automatically save a couple

Re: [PyMOL] PyMOL + APBS plugin

the map object after alignment (matrix_copy foo_1, foo_1_map) Hope that helps. Cheers, Thomas On 13 Jan 2016, at 13:19, Matic Kisovec <matic.kiso...@ki.si><mailto:matic.kiso...@ki.si> wrote: Dear all, I wish to report two issues (numbered 1. and 2.) with APBS plugin in Pymol.

Re: [PyMOL] APBS plugin not working on both Ubuntu Windows 7

Hello Brenton, I used the pdd2pqr provided by Ubuntu repositories (version 1.8) and installed it directly(with Synaptic) from there. The path on my Xubuntu system is: /usr/share/pdb2pqr/pdb2pqr.py I also tried setting something up on Windows but gave up eventually. Good luck and all the best,

Re: [PyMOL] apbs error (Error in background function)

/' TEMPORARY_FILE_DIR = tempfile.gettempdir() # corresponding environment variable: TEMP ... Kind regards, Matic Kisovec On 30. 01. 2015 21:21, Thomas Holder wrote: Dear Matic, the only option to permanently store those paths is to edit the plugin file. Look for apbs_tools.py in the PyMOL

Re: [PyMOL] apbs error (Error in background function)

the latest version. Cheers, Thomas On 28 Jan 2015, at 10:04, Matic Kisovec matic.kiso...@ki.simailto:matic.kiso...@ki.si wrote: Dear Pymol users, I have recieved the same error as mentioned in the email ate bottom that was sent by DE FALCO JR LOUIS in September 2014 to this list

Re: [PyMOL] apbs error (Error in background function)

Dear Pymol users, I have recieved the same error as mentioned in the email ate bottom that was sent by DE FALCO JR LOUIS in September 2014 to this list. There was one reply that is a known bug and a link was provided. The bug was filed in March 2013. The difference is this time this happened