Hi All,
Can anyone tell me how I might change the colors of a specific
selection during the course of a rigimol generated morph? I would like
one domain to go from purple to green, and have so far been unable to
figure out how to do it. I tried coloring the different start/final
states before rigimol-ing but that did not work. I have also tried to
script the state coloring, as described
here:http://www.pymolwiki.org/index.php/Color#Color_States_Individually.
The problem is that cmd.set("surface_color", "newcolor", "resi
430:572", a) for example, where a is the state, does not seem to work at
all. i.e. the color is not changed. The idea was to change the colors
as follows:
states = 30
for a in range(0,states):
incr = 1.0/(states-1)
r = 1.0-a*incr
g = a*incr
b = 1.0-a*incr
col = "["+str(r)+","+str(g)+","+str(b)+"]"
cmd.set_color("newcolor",col)
print "COL state "+str(a+1)+": "+col
cmd.set("surface_color", "newcolor", "resi 430:572", a)
cmd.set("sphere_color","newcolor", "resi 430:572", a)
cmd.recolor()
ugly, I know! this is 64 bit pymol 1.5.0.6 eval for linux. Thanks in
advance,
Max
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