[PyMOL] XYZ format - max size of the name field

Hi, I'm trying to read a large file in XYZ format. By default the first line is the number of atoms in the file. The other lines are giving the name and the coordinates for each atom: I've noticed that when the name of the atom is longer than 4 characters, I cannot select that atom - or it's

[PyMOL] XYZ trajectory file - unbond two atoms, insert a new one, and create new bonds.

Hi all, I am having some troubles with the following problem: I have a trajectory stored in a file having XYZ format - let's assume it has 10 states in total. At the very beginning I have 5 atoms connected in a loop (like in cyclopentane): ATOM1 - ATOM2 ATOM2 - ATOM3 ... ATOM5 - ATOM1 I create

[PyMOL] (no subject)

Hi all, I wonder if it's possible to fill the space (like in the case of nucleotide's ring) between three arbitrary/selected atoms. I'm trying to render an object which is not a biomolecule so "cartoon_ring_mode" is no use for me. Cheers, pawel ---