As a follow up to my last email asking whether there is a way to make 3D
grid representations of molecules
I have found a picture of the kind of thing I am after. Is there a way
to make anything similar to this
http://www.techfak.uni-bielefeld.de/ags/ai/projects/docking/images/align.2ptci-6p
This may sound like a strange question and I am guessing the answer is
just a simple "no" but is there any way to represent the structure of a
protein in cubes with pymol? So say for example take the surface
representation and change that into a whole lot of cube stuck together
to fill in the s
Are there any good tutorials for making movies with PyMol online? I have
looked around and found some but I am wondering if there are any
standouts and hopefully some that are aimed at linux users without using
ImageMagick preferably as I am having trouble with it.
thanks,
Sebastien
Is there a command to select residues around an object rather than atoms. For example the
command "select near, sel01 around 6" selects atoms but I would like to select
residues.
thanks,
Sebastien Gerega
Is there a way to list the residues that are in a selection? For example
if I use the command "select near, sel01 around 6" how can I obtain a
list of the residues in the "near" selection?
thanks,
Sebastien
I have Pymol installed on my dual boot Asus M6Ne notebook and have
noticed that the performance is significantly better in windows than it
is in linux. I am running FC4 and have installed the ati-fglrx driver.
When rotating a 120 amino acid protein I get maximum 8 frames per second
and the CPU
I have just tried installing PyMol on Fedora Core 3 using the rpm on the
website and am getting the following error when I try and run pymol.
Traceback (most recent call last):
File "/usr/lib/python2.1/site-packages/pymol/modules/pymol/__init__.py",
line 326, in ?
import _cmd
ImportError: /u
This is probably a very simple question but I have been unable to find an
answer by just looking online. When I type commands which bring up text in
the viewer window how do i return the molecular image.
for example if i type help show and all the manual appears how do I then
clear the manual from
Is it possible to view the molecular surface representations which are
generated by the program MS (Connolly) or the similar output obtained from
DMS (UCSF). I am aware that one can generate the molecular surface using
PyMol but that is not what I want to do.
Chimera has an option by which MS/DMS
