Re: [PyMOL] pymol + gromacs trajectories

2004-10-14 Thread T . A . Wassenaar
Hi Bruno, Sure I'm aware of that, but for a bit of a system (as I usually have) and a good bit of trajectory (as I usually have), that will ask for quite some memory. Did it a few times, but prefer to use separate pdb's instead. Though admitted that for small systems, a multistate pdb works great

Re: [PyMOL] png error

2004-05-27 Thread T . A . Wassenaar
Hi Torin, Are you by chance trying to write an image without rendering? That will only work if you have something on display. Rendering and subsequent writing of an image should not pose a problem from within a script. Cheers, Tsjerk On Thu, 27 May 2004, Torin Huzil wrote: > I am attemptin

Re: [PyMOL] Coloring atoms by charge

2004-05-27 Thread T . A . Wassenaar
Hi Kaushik, If you have a pdb file with the charges in the b-factor field, you can use Robert Campbells color_b.py to color your atoms accordingly. Maybe you would have to adapt the code a bit to get a good color scheme for that. Cheers, Tsjerk On Wed, 26 May 2004, Kaushik Raha wrote: > Hi,

Re: [PyMOL] movies in presentations

2004-04-16 Thread T . A . Wassenaar
Hi, I've seen exactly these kind of things happening in a package called Yasara, which is freely available in a limited form at www.yasara.org But I am quite fond of the feel and features of Pymol that I would love to see some of such features in there in stead of making the switch :) Tsjerk On