[PyMOL] VASCo plug-in Tk error

2014-10-31 Thread Tim Schulte
Hi everybody, I am trying to run VASCo (VASCo-Modules-1.0.2) as plug-in (ppixplugin_v077.py) on my MacPyMol version 1.6.9.0. Mac version 10.9.2. Maybe someone knows how to fix the problem? Thanks in advance for your help! Errormessage: Error: 1 class '_tkinter.TclError' Exception in Tk

Re: [PyMOL] How to draw clashes in pymol - integration/plug-in of Molprobity in PyMol???

2014-10-22 Thread Tim Schulte
Hej everybody, my question is related to this post. I am just analyzing a structure and really like the way Molprobity puts out information about hydrogen bonds and vdW contacts and so on. It is also possible to take advantage of this analysis in phenix during/after refinement, because Coot

Re: [PyMOL] Editing of the pdb structure

2012-01-29 Thread Tim Schulte
Dear James, I agree with Joao, for fast and dirty minimisation you might try the program Chimera or VegaZZ. If you just wanna have an energy-minimized small molecule the Prodrg server is the way to go. Cheers, Tim Von: João Rodrigues [anar...@gmail.com] Gesendet:

Re: [PyMOL] Movie to export

2011-11-09 Thread Tim Schulte
Hi, Quick time player 7 pro does a great job for me. Cheers Tim Am 11/8/11 9:54 PM, schrieb Troels Emtekær Linnet: Hi. I have made a nice little movie in Pymol. 1500 frames. So now I am wondering what is the best method to export? At the moment I do export to .png with ray tracing each

Re: [PyMOL] movie enhancement feature request...

2011-09-14 Thread Tim Schulte
Yes, that is exactly what I wanted. Perfect. Thank you very much. Am 9/14/11 5:59 PM, schrieb Jason Vertrees: Hi Tim, I love pymol for creating high quality figures and analysing my structures. But creating movies in pymol is rather tedious... CCP4mg seems to be much easier to use for