[PyMOL] Problem starting Pymol in a Python script

2003-11-07 Thread Tom Walsh
t): File "pymol.py", line 3, in ? import pymol File "pymol.py", line 5, in ? pymol.finish_launching() AttributeError: finish_launching - So what am I doing wrong? Thanks, Tom Walsh

[PyMOL] Is it possible to tell if a loaded PDB file contains secondary structure records?

2003-10-22 Thread Tom Walsh
ix this is to run util.ss but this can be slow if you have a lot of structures. Is there a way in the API to tell whether a PDB file you've loaded contains secondary structure records, so that you can avoid an unnecessary call to util.ss? Tom Walsh

[PyMOL] Applying a rotation matrix to coordinates

2003-10-13 Thread Tom Walsh
Hi, I want to superimpose two structures using a translation vector and rotation matrix. Is the transform_object() function the best way to do this? Thanks, Tom Walsh