Re: [PyMOL] Problem starting Pymol in a Python script

2003-11-07 Thread Truls A. Tangstad
On Fri, Nov 07, 2003 at 01:52:42PM +, Tom Walsh wrote: > > Hi, > > I'm trying to start Pymol (version 0.93) in a Python script, > using the first method described in __init__.py i.e.: > > import pymol > > pymol.finish_launching() > > I've set the PYTHONPATH and PYMOL_PATH variables as req

[PyMOL] Problems using chempy.tinker without numeric_type.

2003-11-01 Thread Truls A. Tangstad
I'm trying to programmatically load a PDB-file, using chempy.io.pdb, then run an energy minimization with tinker. The problem is that the tinker-wrapper stores files to the tinker xyz-format, which requires that the numeric_type or text_type attribute is set correctly. PDB.fromFile() doesn't seem t

Re: [PyMOL] Using PyMol as a library - no GUI

2003-10-17 Thread Truls A. Tangstad
On Fri, Oct 17, 2003 at 09:41:24AM -0700, Warren L. DeLano wrote: > > Truls A. Tangstad wrote: > > I'm very interested in using alot of the functionality that PyMol > > offers programmatically from Python, i.e. without using a GUI at > > all. The chempy package se

[PyMOL] Using PyMol as a library - no GUI

2003-10-17 Thread Truls A. Tangstad
I'm very interested in using alot of the functionality that PyMol offers programmatically from Python, i.e. without using a GUI at all. The chempy package seems to cover alot of my needs, loading different file formats etc. even though it doesn't seem to be documented. Is it also possible to use t