Re: [PyMOL] save format for molecule files

2023-05-20 Thread Xavier Fradera
doesn't have aromatic bond orders > - PyMOL has limited capabilities for detecting bond orders and can't > convert aromatic bonds to single/double bonds (kekulization) > - .sdf format doesn't have protein and residue level information, but > .mol2 does > > Ch

[PyMOL] save format for molecule files

2023-05-17 Thread Xavier Fradera
my tests? thanks, Xavier -- Xavier Fradera ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe

[PyMOL] select by size

2014-09-04 Thread Xavier Fradera
ligands with > 10 atoms. Xevi -- Xavier Fradera -- Slashdot TV. Video for Nerds. Stuff that matters. http://tv.slashdot.org/___ PyMOL-users mailing list (PyMOL-users@lists.

[PyMOL] pymol 3D movies

2014-08-25 Thread Xavier Fradera
Hi, I am looking into making a quad-buffered stereo 3D movie. Is this possible with mpeg or any other format ? I know I could just play the movie from pymol, but would like to be able to save as mpeg with x-ray traced images for higher quality. Xevi -- Xavier Fradera