[PyMOL] sticks

2013-12-21 Thread Ahmet yıldırım
gz1kcathiu2x6/resi-15.png Where did I mistake? Thanks in advance -- Ahmet Yıldırım -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how applicati

[PyMOL] RMSD unit

2013-12-12 Thread Ahmet yıldırım
Dear users, What is the unit of RMSD in pymol? Nanometer or angstrom? PyMOL>align structure1 & n. ca, structure2 & n. ca -- Ahmet Yıldırım -- Rapidly troubleshoot problems before they affect your busine

[PyMOL] extreme projections

2013-07-11 Thread Ahmet yıldırım
Dear users, I extracted extreme projections using the Gromacs tool "g_anaeig". I did make pictures which show the difference but I could not do as I want them. Can you help me? Thanks in advance -- Ahmet Yıldırım

[PyMOL] names of the residues

2013-01-25 Thread Ahmet yıldırım
Dear users, How can I learn the names of the residues that make up the N- and C- terminals of a structure using Pymol? Thanks in advance -- Ahmet Yıldırım -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012

Re: [PyMOL] missing residues

2011-10-14 Thread ahmet yıldırım
I-TASSER) > > Alternatively, you can use Modeller to model in the loop and refine it. > > > > 2011/10/14 ahmet yıldırım > >> Dear users, >> >> There are 7 missing residues in xxx.pdb file. xxx.pdb consist of chain a >> and chain b. In chain b there are

[PyMOL] missing residues

2011-10-14 Thread ahmet yıldırım
Dear users, There are 7 missing residues in xxx.pdb file. xxx.pdb consist of chain a and chain b. In chain b there are only 7 missing residues. chain a is complete. I fitted the complete chain onto the one with missing residues, wrote the new coordinates for the fitted chain and put them in the br

Re: [PyMOL] pymol error for all pdb files

2010-10-12 Thread ahmet yıldırım
I installed Fortran95 and Problem is solved 11 Ekim 2010 23:39 tarihinde ahmet yıldırım yazdı: > Dear Pymol users, > > I installed Pymol 1.2 on Ubuntu 9.1 but I have the error as the following > for all PDB files. > (Select File -> open from the user menu, and select and op

[PyMOL] pymol error for all pdb files

2010-10-11 Thread ahmet yıldırım
Dear Pymol users, I installed Pymol 1.2 on Ubuntu 9.1 but I have the error as the following for all PDB files. (Select File -> open from the user menu, and select and open that PDB file). *Error: 1* > * Exception in Tk callback* > * Function: instance at 0x9f3270c>> (type: )* > * Args: ()* > *