[PyMOL] showing sequence conservation on the surface

Hello PyMol community! is there any way to display sequence conservation on the surface of a protein? i.e. to use the info I have in a sequence alignment. do I have to do this by hand? Thanks, Camille

Re: [PyMOL] homologous alignments?

Hello, I am unable to read the archive at the moment so can anyone tell me the command that allows colouring of the edge of helices and strands (usually grey). I think this was posted recently but I don't have it in any of my saved scripts. Many thanks, Camille Dr Ca

[PyMOL] color by ss

molscript? I apologise if this question has been dealt with before (I have tried to find previous messages). I imagine that this would be important to many who would like to use pymol to make figures for publication. Many thanks, Camille

[PyMOL] RGB2CMYK

when the resulting ray traced image file is viewed in CMYK mode in illustrator. Greens, especially, seem to suffer in conversion. Help! cheers, Camille MRC-LMB Cambridge University UK

[PyMOL] surface charge?

that this sort of thing was in the pipe-line, do you have a rough estimate of when it will be available? Camille p.s. I'm working on os x with npymol.

[PyMOL] summary of CA trace

specific CA atoms and reduced the radius with.. alter n, vdw=1 ! where n is the name of the CA Camille

[PyMOL] C alpha trace

)? I read that pymol has trouble with connectivity outside normal chemical bond lengths. Sorry, this sounds like it might have a very simple answer! Thanks again, Camille

[PyMOL] Stereo labeled figs?

in my stereo figure. Older messages on the BB seem to imply this can't be done in pymol. Do you know if any progress has been made on this? Many thanks, Camille p.s. I'm running npymol on OS X.