[PyMOL] Problem with Seleno-Cysteine

2002-08-06 Thread joergli
Hi everybody I have the structure of a Molybdo-CODH (CO-Dehydrogenase), which contains a Seleno-Cysteine as Ligand for the active site cluster (see 1QJ2.pdb) The residue b/388 is denoted as EYS in the pdb file. In the cartoon representation, pymol does not display this part of the backbone (I get

[PyMOL] Réf.: [PyMOL] Help! Color by atom/H-bond display/mouse on OSX

2002-07-31 Thread joergli
Le Tue, 30 July 2002, Luca Jovine a écrit Hello again PyMol users, I've now been playing with PyMol on OSX for 10 days or so and still love it. I also developed three more questions though ;) 1) Is there any typed command one can use to color a selection by atom type (rather than

Re: [PyMOL] Secondary structure assignments

2002-07-29 Thread joergli
Le Sun, 28 July 2002, Nathaniel Echols a écrit snip but I'm working on making it more general. I suppose since I only use this for loading files into PyMOL, I could just write it in Python as a PyMOL module. . . would that be useful to anyone else? Yes, please. There are some structures that

Re: [PyMOL] Secondary structure assignments

2002-07-29 Thread joergli
Le Sun, 28 July 2002, Nathaniel Echols a écrit snip but I'm working on making it more general. I suppose since I only use this for loading files into PyMOL, I could just write it in Python as a PyMOL module. . . would that be useful to anyone else? Yes, please. There are some structures that

[PyMOL] Pymol and Raster3D

2002-07-28 Thread joergli
Hello I know I can use the Raster3d output from molscript to view and render it in pymol. But is there a way to output a pymol-generated structure in r3d-format for rendering with Raster3d's render program? (It's because render is a lot faster than pymol's built-in raytracer...) thanks joerg

[PyMOL] Réf.: [PyMOL] Up down arrow problem under OSX

2002-07-24 Thread joergli
Hi This is just the same for me using 0.82 under Linux. As Brian Swalla mentioned before, Up/Down-arrows only work in the GL window. Would be nice though, to have it working in the external window, too, because typing response is faster in this window joerg Le Tue, 23 July 2002, Luca Jovine a