[PyMOL] local resolution map

hi, is it possible to use the local resolution maps from cryosparc in pymol ? specifically we want to color the primary map based on the local resolution map. thanks jpd ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@li

Re: [PyMOL] apbs plugin

. From: jp d To: Thomas Holder Cc: "Schubert, Carsten [JRDUS]" ; "pymol-users@lists.sourceforge.net" Sent: Wednesday, February 12, 2014 11:16 AM Subject: Re: [PyMOL] apbs plugin hi, if i enable debugging i get a little more info get_default_loca

Re: [PyMOL] apbs plugin

et_default_location will search the following :  ['/tmp', '/tmp', '.'] get_default_location will search the following :  ['/tmp', '/tmp', '.'] get_default_location will search the following :  ['/tmp', '/tmp', '.

Re: [PyMOL] apbs plugin

From: "Schubert, Carsten [JRDUS]" To: jp d ; "pymol-users@lists.sourceforge.net" Sent: Tuesday, February 11, 2014 12:14 PM Subject: RE: [PyMOL] apbs plugin Hi jpd,   try running APBS directly just using the .in file generated from a failed run. That may

[PyMOL] apbs plugin

hi, anyone else having trouble with the apbs plugin? i keep crashing as soon as i try to do anything. if i select 'Choose externally generated PQR' or 'run APBS' i get this In show error 1 alloc: invalid block: 0x2c29fb78: 0 0 Abort this is with pymol 1.7 ubuntu 12.04 using 1FAS fetched from

[PyMOL] rna cartoon rectangle morph

hi, i have a PDB with a morph of an RNA molecule in about 30 states. when i display each state separately the cartoons are smooth. however when i load the morph and display it in cartoon rectangle it will have occasional 'twists'. this is also true for oval,arrow and dumbbell. is there some setti

[PyMOL] ed maps

hi, i think i am missing something simple. i open my pdb files, then auto open an mtz file which draws the map far away from my pdb. how do i center and redraw the map ? is there a gui way or should i isomesh etc ? thanks jpd -

[PyMOL] euler-rod axis

hi, from the get_object_matrix output, i can use the euler-rodrigues transformation http://en.wikipedia.org/wiki/Euler%E2%80%93Rodrigues_formula and get the axis and angle of rotation. is there a way to place the axis? perhaps from the translation vector in the matrix? thanks jpd-

[PyMOL] map problem

hi, i have a map that gives me this warning: ObjectMesh-Warning: no symmetry expanded map points found. it is a ccp4 map i know what unit cell and space group it is, but i think it has gotten lost. does anyone have a suggestion? thanks jpd From: Jason Vertr

[PyMOL] next resi

hi, is there a way in pymol/python scripts to determine what the next or previous resi would be? it needs to handle insertions and deletions thanks jpd -- All the data continuously generated in your IT infrastructure co