[PyMOL] Question about Pymol movie

2009-03-03 Thread liyang
Dear all, I got two small molecule binded protein structures, during the reaction, this molecule moves from one site to another. Given the two pdb files, can I make a movie to simulate the whole process in Pymol? Any suggestion will be appreciated. -- Open WebMail Project (http://openwebmail.

[PyMOL] Generate pictures with CA atoms only

2008-10-09 Thread liyang
Hi All, I have a pdb file with only C alpha atoms, all the other atoms are missing, pymol can only show a lot of spots with that file. How can I use it to draw a secondary structure picture, if I know which part is helix or sheet? I tried to specify them but it said some atoms have been modif