Dear All,
I have an electron density map that apears to show something in O, but when I
display it in PyMOL the map seems to be shifted in some way, that is, I can see
features with the same size, shape and relative orientation, but they no longer
coincide with the atomic model. I suspect a proble
Dear All,
I am running Pymol 0.95 on Mandrake Linux 10.0, or at least I was until today.
Yesterday I performed a standard update on the system, and today pymol crashes
with the following error:
GLUT: Fatal Error in pymol.exe: OpenGL GLX extension not supported by display:
:0.0
PyMOL: abrupt pro
Dear All,
I want to get a specific view set up in PyMOL based upon the coordinates inthe
PDB file. I have calculated where the center should be (i.e. c.o.m. of the
coordinates) and then calculated the plane a*x + b*y + c*z = 1 for three points
to get the plane I want for the image, and the normal
Dear All,
I have some residues shown as sticks and a heteroatom shown as a sphere. I woul
dlike to make the sphere a little smaller compared to the sticks. How can I
control the radius of the sphere?
Any help appreciated, snippet of script below,
Richard Baxter
select pocket3=((s;RCVL and i;189
Thank Warren, that works great -RB
Quoting "Warren L. DeLano" :
> Richard,
>
> It's not GUI, but you could simply bind a function key such as F1 to
> that command:
>
> cmd.set_key('F1',lambda :cmd.label("(lb)",'"%s %s
> %s"%(name,resn,resi)'))
>
> You might then want to bind 'F2' to something
Dear All,
I want to look at my structure in PyMOL and, having centered on something
defined by my selection script, pick atoms nearby and see what residues they
belong to. That is, I want to pick select an atom with the mouse and have its
name, residue name and residue number appear on screen, lik
Dear All,
I tried installing 0.90 from source, using "option 1", i.e.
python setup1.py install
python setup2.py
But when I try to run the executable pymol.com, I get the error:
Traceback (most recent call last):
File "/usr/lib/python2.2/site-packages/pymol/__init__.py", line 92, in ?
impo
