[PyMOL] PymolX11Hybrid problems

2006-02-14 Thread Avram Slovic
the APBS and put it in the folder: PYMOLX11Hybrid.app/pymol/modules/pmg_tk/startup and also downloaded apbs_tools.py, and put it in the folder: $PYMOL_PATH/modules/pmg_tk/startup/, but I don' think that this was correct. Can someone help? thanks Avram Slovic

[PyMOL] PML files

2005-08-12 Thread Avram Slovic
Hi, does anyone know what file type to save text as (in OS X) for a .pml file? I can't get PyMol to recognize RTF, etc... thanks Avram Slovic

[PyMOL] Another question

2003-12-19 Thread slovic
Hi all, another question. Does anyone know how to make spheres smaller. I would like to make the ball and stick looking residues like those in Molscript thank you Avram -- Avram M. Slovic Biochemistry and Molecular Biophysics University of Pennsylvania 420 Curie Blvd. 1010 Stellar Chance

[PyMOL] Fwd: Re: PyMOL-users digest, Vol 1 #491 - 3 msgs

2003-12-19 Thread slovic
Hi, I would like to know how to insert a movie into PowerPoint (for Mac OS X). Should I firt convert it into an animated .gif in another program like flash? thanks Avram -- Avram M. Slovic Biochemistry and Molecular Biophysics University of Pennsylvania 420 Curie Blvd. 1010 Stellar

[PyMOL] Question

2003-12-19 Thread slovic
Hi, does anyone know how to color the inside of helices a different color than the outsides? thanks Avram -- Avram M. Slovic Biochemistry and Molecular Biophysics University of Pennsylvania 420 Curie Blvd. 1010 Stellar Chance Bldg. Philadelphia, PA 19104 L:215-898-3496

[PyMOL] Spheres and backbone coloring

2003-11-13 Thread slovic
Hi, does anyone know how to color only the ribbon of a polypeptide, while not coloring the CA atoms when using spheres? If I say "color grey, name ca", then the CA atoms of my spheres representations are also colored grey. thanks Avram -- Avram M. Slovic Biochemistry and

[PyMOL] resolution

2003-11-07 Thread slovic
Hi, will PyMol only save images at 72dpi, or can I dial that up somehow? thanks Avram Slovic -- Avram M. Slovic Biochemistry and Molecular Biophysics University of Pennsylvania 420 Curie Blvd. 1010 Stellar Chance Bldg. Philadelphia, PA 19104 L:215-898-3496