Re: [PyMOL] PyMOL-users Digest, Vol 17, Issue 15

(PDT) From: surendra negi Subject: [PyMOL] pymol installalation To: pymol-users@lists.sourceforge.net Message-ID: <153604.12080...@web60116.mail.yahoo.com> Content-Type: text/plain; charset=us-ascii Dear Users, I am unable to install new pymol build in XP.. After running setup file it is

[PyMOL] pymol installalation

Dear Users, I am unable to install new pymol build in XP.. After running setup file it is doing nothing.. any idea? though I am able to install other softwares like vmd etc. thank you. __ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best

Re: [PyMOL] PyMOL-users Digest, Vol 5, Issue 22

Is there any 32 bit version of pymol? I am unable to install it in XP - Original Message

Re: [PyMOL] PDB loader

Here are five lines using wget in perl #how to use: perl a.pl [pdbfile 4 letter code] #perl a.pl 1dn2 $pdbn=$ARGV[0]; $pdbn=~ tr/a-z/A-Z/; $temp = sprintf "-q -O %s.pdb \"http:\/\/www.rcsb.org\/pdb\/files\/%s.pdb\?format=PDB&pdbId=%s&compression=None\

Re: [PyMOL] pdb

New PDB file location is http://www.rcsb.org/pdb/files/$pdbfilename.pdb.gz http://www.rcsb.org/pdb/cgi/export.cgi/$pdbfilename.pdb is not working sn __ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo

[PyMOL] PDB loader

Hi, In pymol, PDB loader service is no longer working. My self downloader script is also not working! They changed the file location. There is no more export.cgi in pdb web site. sn __ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam

[PyMOL] Re: PyMOL-users digest, Vol 1 #1223 - 4 msgs

Subject: [PyMOL] Superimpoition problem Use first structure for reference and then align rest of them to first one. --- pymol-users-requ...@lists.sourceforge.net wrote: > Send PyMOL-users mailing list submissions to > pymol-users@lists.sourceforge.net > > To subscribe or unsubscribe via

Re: [PyMOL] biological unit

from the PDB the > "biological unit" coordinate file, you can show it > using split_states OBJECT > > Cheers, > > Tsjerk > > On 5/18/06, surendra negi wrote: > > > > Hello pymol, > > > > Is it possible to create biological unit of a &

[PyMOL] biological unit

Hello pymol, Is it possible to create biological unit of a molecule using pymol? if yes then how. How can I use symmetry command in pymol. I read a mail long back related to split_states to create created following images from a single molecule http://delsci.com/img/1c8e.jpg http://delsci.com/

[PyMOL] PDB center

Dear User, Is it possible to change center of the coordinate system in pymol to (0,0,0). I want to change center of my PDB file to orgin. thanks surendra __ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.

[PyMOL] Re: PyMOL-users digest, Vol 1 #996 - 2 msgs

check this link! http://www.csb.yale.edu/userguides/graphics/pymol/electro.html Hope it wud help. best sn --- pymol-users-requ...@lists.sourceforge.net wrote: > Send PyMOL-users mailing list submissions to > pymol-users@lists.sourceforge.net > > To subscribe or unsubscribe via the World W

[PyMOL] Re: PyMOL-users digest, Vol 1 #958 - 3 msgs

Yes. You can do this with pymol easily.First open both PDB files in PYMOL. Now go to mounse menu option and click on 3 Button editing mode. Next step double click on any atom of the PDB file which you want to rotate or translate wrt first. Press shift and use left mouse button to rotate or press s

[PyMOL] Re: PyMOL-users digest, Vol 1 #951 - 10 msgs

Try, LAPACK packages. Available for most GNU/Linux distributions -- Message: 4 Date: Tue, 19 Jul 2005 14:53:47 +0200 From: tanri...@stud.uni-frankfurt.de To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Implementing PCA Hi everybody, I want to write a PCA script

[PyMOL] Re: PyMOL-users digest, Vol 1 #947 - 4 msgs

" > > > Today's Topics: > >1. rms values for several states (Daniel > Hasenpusch) >2. tube thickness (Alexandra Deaconescu) > 3. Problem with Installation of PyMOL 0.98 on > WinXP Pro SP2 (Brian A. Canada) >4. APBS help (surendra negi) > >

[PyMOL] APBS help

Hi, I am trying to run APBS. I have compiled the software and it is working.. But after few second later i am getting following error message. I guess there is some problem with map file. Any solution or help? Thanks in advance sn == This PyM

[PyMOL] label

Hi, I am back with a small prob! may be i am missing something in command line Q: How to label residue in cartoon selection using command line. Sincerely sn __ Do you Yahoo!? The all-new My Yahoo! - What will yours do? http://my.yahoo.com

[PyMOL] Map Origin and PDB

Hi I have a fitted .ccp4 map and .PDB file. When I open them in Pymol, they appeared in different location. How can i fix this problem. ___ Do you Yahoo!? Declare Yourself - Register online to vote today! http://vote.yahoo.com