Michael,
thanks for your reply, this works fine for me. However, I thought there is a
nicer solution on setting the transparency for cgo's after creation.
Regards,
Yusuf
--
Yusuf Tanrikulu
Bioinformatics Diploma Student
Department of Biosciences
Johann-Wolfgang-Goethe Univerity Frankfurt
Siesm
Lari,
the way you've described is a nice workaround for images and presentations,
which I had in mind, too. But it is not applicable while I am working with
PyMOL online and want to make my CGO's transparent to see what is in them
(including ability to rotate and zomm in/out the scene (which is n
Hi everybody,
i've just created many CGOs, which show up solid surfaces like spheres and
ellipsoids. Is it possible to set the transparency of some CGO's to i.e. 0.5
and leave the others solid?
I've checked out the reference and the manual, and found something like:
set transparency=0.5, object
Hi everybody,
I want to write a PCA script (.py) for use within PyMOL. Are there any matrix
operations or eigenvector calculations implemented by now, or do I have to
integrate other libraries? How do I do that in Linux?
Thanks for your help.
Yusuf
--
Yusuf Tanrikulu
Bioinformatics Diploma Stu
Hi,
web publishing? Sounds like a nice feature... are there any
documentations about
that?
regards
Yusuf
Quoting Warren DeLano :
Sebastien,
Yes, you can do with with a "p1m" file, which is like a "pml" file,
but data can be included as well. Also note that p1m files are
intended for web p
Hi everybody,
I want to vizualize 3D-ellipsoids around molecules. Is there any built-in
PyMOL/Python method to do so? If not: how am I going to generate ellipsoids or
dots at any position (x,y,z) in the space?
Thanx for your help.
cheers,
Yusuf
Hi,
if I show up a sphere around an picked atom, and want to change its radius, I
always use the
set sphere_scale
method. But, to which value am I scaling to? Isn't it possible to change the
radius of a sphere with something like 'set sphere_radius' in Angstroms?
I could not find any information
Hello,
thanks for the prompt reply, it works great!
Cheers
Yusuf
Quoting Warren DeLano :
Yusuf,
see
http://sourceforge.net/mailarchive/forum.php?thread_id=7495694&forum_id=60
Close! Actually I like you're usage expectation even better than how
PyMOL currently works -- but at the present t
Hi everybody,
I am new to PyMol and scripting with Python, and I would be very grateful if
anybody can help me.
After loading serveral superposed molecules, I made a selection of some atoms as
follows:
from pymol import cmd
cmd.select('sel01', ('elem c and not (neighbor elem n+o)')
cmd.color (
