On Fri, Sep 11, 2009 at 1:59 PM, Maia Cherney wrote:
> Is it posible in pymol to select all residues of a certain type
> automatically, like all arginines or all lysines + arginines in a chain?
select resnam arg
select chain A and (resnam lys or resnam arg)
-
Maia,
select all_arg_lys, resn arn+lys
Cheers,
Warren
> -Original Message-
> From: Maia Cherney [mailto:ch...@ualberta.ca]
> Sent: Friday, September 11, 2009 2:03 PM
> To: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] Alignment Objects
>
> Hi,
> I
Hi,
Is it posible in pymol to select all residues of a certain type
automatically, like all arginines or all lysines + arginines in a chain?
Maia
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Hi David
On Thu, 10 Sep 2009 14:47:43 -0700 (PDT) David Hall
wrote:
> Is there any documentation on getting information out of alignment objects
> into scripts? I tried looking around the wiki, but I didn't see anything.
>
> I'm just wondering things like if I have a residue in one object, find
Is there any documentation on getting information out of alignment objects into
scripts? I tried looking around the wiki, but I didn't see anything.
I'm just wondering things like if I have a residue in one object, finding the
residue in another object that has been aligned.
Thanks,
David
r...
Cheers,
Warren
> -Original Message-
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Andreas Henschel
> Sent: Friday, January 28, 2005 9:18 AM
> To: pymol-users@lists.sourceforge.net
> Subject:
Dear PyMOL community,
I am trying to use the align command (from within python)
and want to evaluate the pairwise matches.
the command
cmd.align(sel1, sel2, object="alignment")
should do. Sorry for this stupid question,
but how do I get hold of the "alignment" object, and what is its
function
