Re: [PyMOL] Building of the Carbon lattice

Hi James, just calculate the coordinates and write them out in PDB format, quite simple task. Try the attached script. Cheers, Thomas James Starlight wrote, On 01/04/13 09:14: Hi Mike, Chimera can build such lattices by means of it's build structure module. On other hand I want to build

Re: [PyMOL] Building of the Carbon lattice

. Date: Fri, 4 Jan 2013 11:13:39 +0100 From: spel...@users.sourceforge.net To: jmsstarli...@gmail.com CC: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Building of the Carbon lattice Hi James, just calculate the coordinates and write them out in PDB

Re: [PyMOL] Building of the Carbon lattice

Hi Mike, I simply measured x_shift and y_shift from a cyclohexane fragment. Use the graphical Builder or the fragment command to load stuff from the fragment library. PyMOL fragment cyclohexane Cheers, Thomas Mike Marchywka wrote, On 01/04/13 15:44: Where do you get the x_shift and y_shift

Re: [PyMOL] Building of the Carbon lattice

: Re: [PyMOL] Building of the Carbon lattice Hi Mike, I simply measured x_shift and y_shift from a cyclohexane fragment. Use the graphical Builder or the fragment command to load stuff from the fragment library. PyMOL fragment cyclohexane Cheers, Thomas Mike Marchywka wrote, On 01/04/13 15

Re: [PyMOL] Building of the Carbon lattice

@lists.sourceforge.net Subject: Re: [PyMOL] Building of the Carbon lattice Hi Tsjerk! This is the example of such lattice which I've built using Chimera! http://imageshack.us/photo/my-images/543/lattice.png/ this is simple model of the Carbon-contained lattice without hydrogens. So I'd like

[PyMOL] Building of the Carbon lattice

Dear PyMol users! I'd like to build simple 2D lattice model consisted of the Carbon atoms connected by the single bonds. Could you provide me with some script which can build such lattices of the desired dimensions ? Thanks for help James