On 12/20/2011 11:49 AM, Thomas Holder wrote:
> On 12/19/2011 11:20 PM, Jason Vertrees wrote:
>> Cleaned up a little, this would make a nice simple addition to the
>> PyMOLWiki script library.
>
> I can do it, on the basis of spectrumany.
there it is:
http://pymolwiki.org/index.php/Spectrum_states
On 12/19/2011 11:20 PM, Jason Vertrees wrote:
> Cleaned up a little, this would make a nice simple addition to the
> PyMOLWiki script library.
I can do it, on the basis of spectrumany.
Cheers,
Thomas
> Cheers,
>
> -- Jason
>
> On Mon, Dec 19, 2011 at 2:13 AM, Takanori Nakane
> wrote:
>> Hi
Cleaned up a little, this would make a nice simple addition to the
PyMOLWiki script library.
Cheers,
-- Jason
On Mon, Dec 19, 2011 at 2:13 AM, Takanori Nakane
wrote:
> Hi Jacob,
>
> The following command will make blue to purple spectrum.
> (please type in one line)
>
> for i in range(1 + cmd.
Yes, now it works perfectly--thanks very much! Also, did you see some
advantage of doing the b-factor idea over your script, or just a good
parallel strategy?
Jacob
On Mon, Dec 19, 2011 at 2:41 AM, Thomas Holder
wrote:
> Hi Jacob,
>
> I fixed the color_obj script in the wiki, it had a bug.
>
> B
Jacob Keller wrote, On 12/19/11 19:04:
> Yes, now it works perfectly--thanks very much! Also, did you see some
> advantage of doing the b-factor idea over your script, or just a good
> parallel strategy?
it's just a good parallel strategy. And is done with 2 lines instead of
loading an extra scri
Hi Jacob,
I fixed the color_obj script in the wiki, it had a bug.
Btw. I like Tsjerk's suggestion best, using b-factors.
Cheers,
Thomas
Jacob Keller wrote, On 12/19/11 03:38:
> Dear Pymol list,
>
> I have been trying to color the states in a morph by spectrum to try
> to show the motion in
Hi Jacob,
The following command will make blue to purple spectrum.
(please type in one line)
for i in range(1 + cmd.count_states()): cmd.set("cartoon_color",
"0x%02x00ff" % (i * 255 / (2 + cmd.count_states())), "all", state=i)
You can change spectrum by changing
"0x%02x00ff" % (i * 255 / (
Hey :)
You could copy the state to the b-factor field:
fetch 1nmr, async=1
split_states 1nmr
for i in range(1,cmd.count_states()+1): cmd.alter("1nmr_%04d"%i,"b=%d"%i)
delete 1nmr
spectrum b
Cheers,
Tsjerk
On Mon, Dec 19, 2011 at 7:38 AM, Jason Vertrees
wrote:
> Hi Jacob,
>
> You cannot use th
Hi Jacob,
You cannot use the spectrum command across multiple states like that.
Your next best bet is to try:
set color, color_name, obj_name, state=X
For example,
set line_color, red, myProtein, state=1
set line_color, orange, myProtein, state=2
set line_color, yellow, myProtein, state=3
...
Dear Pymol list,
I have been trying to color the states in a morph by spectrum to try
to show the motion in still form, using the following method:
split_states foo, # after which I get the states as new objects as expected
color_obj(rainbow=1) # after which I get the following error mess
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