Re: [PyMOL] Command-line arguments when using PyMOL to launch a script

2008-02-15 Thread Michael Lerner
Hi, First, the initial error you were seeing was a syntax error: > from sys import argv > my_argv =3D argv[argv.index("--"):] > print my_argv[1], my_argv[2] is failing because of the word "3D" Second, that used to fail on Linux systems anyway (it worked on some other systems). I tend to use opt

[PyMOL] Command-line arguments when using PyMOL to launch a script

2008-02-15 Thread Josep Maria Campanera Alsina
Hi all, I'd like to execute pymol like: pymol -c script.py arg1 arg2 arg3 arg4. (1) Reading into PyMolWiki http://www.pymolwiki.org/index.php/Scripting, I've learned that I have to type: pymol -c script.py -- arg1 arg2 arg3 arg4 and then add to my script: from sys import argv my_argv =3D argv[a

[PyMOL] Command-line arguments when using PyMOL to launch a script

2007-08-01 Thread Michael Lerner
Hi, I have a script that uses PyMOL to aid with a lot of calculations. So, I run the script like this: pymol -c script.py The script has grown so that it has a lot of options. Right now, I edit the script every time I want to change them. If it were a normal Python script, I'd run it like scrip