Re: [PyMOL] DNA ligand presentation in PyMOL

2013-01-10 Thread Thomas Holder
Hi Amna, DNA molecule has internal HBONDS too.. how can i see the hbonds made between just ligand and DNA, ??? If there is nothing else than DNA and ligand, this should probably work (otherwise, be more precise with the selections...): PyMOL distance hbonds, (polymer), (organic), mode=2 how

[PyMOL] DNA ligand presentation in PyMOL

2013-01-08 Thread amna khan
Hi, I have a model of DNA-Ligand, defualt both ligand and DNA are represented as sticks i make DNA as cartoon and ligand as stick, this is general presentation DNA molecule has internal HBONDS too.. how can i see the hbonds made between just ligand and DNA, ??? how can i show just