I see, so if i get this right, every protein structure has at least one
biological unit, sometimes it just conincides with the asymmetric unit.
So it would be save to write .pdb1 in any case.
Cool, thanks for pointing this out to me.
Martin
On 03.05.11 22:22, li...@cowsandmilk.net wrote:
Hi Martin,
you may also consider these scripts from PyMOLWiki that generate the
biological assembly from the asymmetric unit.
http://pymolwiki.org/index.php/BiologicalUnit/Quat
or
http://pymolwiki.org/index.php/BiologicalUnit
Cheers,
Thomas
Martin Hediger wrote, On 05/03/11 22:00:
Dear
Hi Martin,
Do you mean something like this? If so, use the type= parameter with fetch.
# grab the biological unit; this PDB1 is in
# 2 states, so split them with multiplex
fetch 1avd, type=pdb1, multiplex=1, async=0
# color the chains
util.color_chains()
# show as cartoon
as cartoon
the biological assembly from the PDB
Dear all
I would like to ask how it is possible to download the coordinate file for the
biological assembly of a protein structure from the PDB.
Naturally, this is not a question directly related to PyMOL, but I thought I'll
be reaching at least a couple
