Re: [PyMOL] Fitting/alignment of non-identical sequences -- UPDATE

2005-03-31 Thread Robert Campbell
Dear Folks, * I [2005-03-29 16:27] wrote: > After playing around with > this I finally got tired of doing it manually, so of course I wrote a > python script to do this. It uses the alter command (so it isn't fast!) > to modify the alt, name, resn, resi, chain, and segi values to match in > the

[PyMOL] Fitting/alignment of non-identical sequences

2005-03-29 Thread Robert Campbell
Dear Folks, I know a number of people have stumbled over the difficulty of calculating RMSD values for structures of non-identical sequences. While teaching a class that introduced students to the use of PyMOL to look at protein structures and to the study of certain structurally homologous struct