[PyMOL] Fwd: Visualization of the protein-ligand interactions

2013-04-24 Thread Thomas Evangelidis
As I understood fconv can be used for the split several mol2 (or pdb) files which was placed in 1 model to the several pdb files, doesnt it ? fconv can do miracles :) check it out ! fconv -h In past I forced with some problems with g_hbond. Is there any other way to monitor h bonds

Re: [PyMOL] Fwd: Visualization of the protein-ligand interactions

2013-04-24 Thread James Starlight
Thomas, actually I used very routine way. Firstly I've extract conformers of protein-ligand complexes from the trajectory. Than I've loaded it into pymol and visualize possible interactions. Than I've selected most representative conformers and loaded it separately into pose view to obtain 2D