Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-05 Thread Jason Vertrees
Mike, Many distros have PyMOL already in their package management system. Have you tried that first? I suggest downloading the latest code, v1.5.0.4, from the open-source project page, if you want to build by hand. To build, you need Python 2.7 or later and the process is very simple: sudo

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-05 Thread Jason Vertrees
Hi Mike, I suggest downloading the latest code, v1.5.0.4, from the open-source project page, if you want to build by hand. see comments in my last post, I think that is what I did. Although autoreconf may not have helped anything. I see the confusion now. We'll update SourceForge on our

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-05 Thread Mike Marchywka
From: jason.vertr...@schrodinger.com Date: Fri, 5 Oct 2012 09:36:29 -0500 Subject: Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb. To: marchy...@hotmail.com CC: li...@cowsandmilk.net;

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-04 Thread Mike Marchywka
fwiw, I never figured out why the out-of-the-box build hung  using the python approach but I went through the ./cogifure, make make install route and did get the test molecules to display. However, I ran into lots of problems with the ShaderMgr and ccealignmodule and then finally the link was

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-04 Thread Mike Marchywka
CC: pymol-users@lists.sourceforge.net From: li...@cowsandmilk.net Subject: Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb. Date: Thu, 4 Oct 2012 22:03:59 -0400 To: marchy...@hotmail.com You don't need a

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-04 Thread David Hall
You don't need a license for the open source version. If you provided details on what OS/distribution you are building on, people may try to replicate and understand why the python version hung. In my experience, using setup.py generally worked out of the box. -David On Oct 4, 2012, at 9:22