Re: [PyMOL] Names of objects in GUI in pymol

2021-02-22 Thread Jeff Saxon
pardon, just one additional question, which might be alitle bit custom issue, however.. Imagine, that I have 2 groups of the pdbs objects loaded into same pymol session: 2 pdbs with the prefix COG_*.pdb, and 2 pdbs with the prefix AA_*.pdb. Would it be possible to subtract the both prefixes from t

Re: [PyMOL] Names of objects in GUI in pymol

2021-02-22 Thread Ali Saad Kusay
No worries Jeff, Use editing mode and you can move it with mouse. See around 3:30 in this video, https://m.youtube.com/watch?v=yBFzJ3ql4qU&ab_channel=MolecularMemory. You can move all labels with this command: set label_position (x,y,z) This will move the labels as needed in the x, y and z dir

Re: [PyMOL] Names of objects in GUI in pymol

2021-02-22 Thread Jeff Saxon
Thank you, Ali! One question - is there any command which would allow to change position of the text of the label produced by the label sele, model ? In fact as I noticed, it produces correctly label text just above the object, while I need to move it a litle bit in one of the directions ... Cheers

Re: [PyMOL] Names of objects in GUI in pymol

2021-02-22 Thread Ali Saad Kusay
Hi Jeff, The name of an object is stored in the model attribute. Select an atom in the object and use this command: label sele, model If you want to automate this over all your PyMOL objects, you can use this script, this will put a label at the centre of each object but it has to create a p

[PyMOL] Names of objects in GUI in pymol

2021-02-22 Thread Jeff Saxon
Dear Pymol Users, I am looking for a possibility to display names of the objects in the pymol session. For example I loaded 4 objects corresponded to 2 different positions of the same ligand as well as 2 positions of its centres of masses. How would it be possible to display the names of each of t