We discussed this a bit off-list, and it looks like this was the answer:
The potentials are assigned to points in space. That's why the
isosurfaces don't change, and also why the surface coloring changes
when you change the shape of the surface.
Hope that helps anyone else who might have this q
Raúl,
I don't have time to look at this in detail right now, but .. what
exactly do you mean that the potentials change between frames? What
happens if you draw isosurfaces? Do they change?
-michael
On 1/7/07, Raúl Mera wrote:
Dear all,
Two things.
First, I just written a small plugin that
Dear all,
Two things.
First, I just written a small plugin that uses the
program "reduce" to add hydrogens to a molecule or to
a trajectory loaded in Pymol.(since each frame of the
trajectory is hydrogenated by reduce, I think that
protonation states could vary between frames) This
allow us to hav
