Re: [PyMOL] Problem with Pymol following update to Mac Big Sur

Hi Marc, The latest versions of PyMOL (e.g. 2.4) work fine on macOS Big Sur. Old versions of MacPyMOL (until 1.8.6) are not compatible, unfortunately, and we're not aware of any workarounds to make it work. Upgrading PyMOL is your only option. Cheers, Thomas On Mon, Apr 19, 2021 at 8:16 AM Ma

[PyMOL] Problem with Pymol following update to Mac Big Sur

Hello, I have recently updated the iOS of my MacBook Air to Big Sur (version 11.2.3) and since then, I cannot use Pymol anymore. This is very annoying as it is my favorite program to generate publication grade figures. Here is the error message I get : This Executable Build integrates and exte

Re: [PyMOL] Problem with pymol

Hi Roger, Looks like Open3dQSAR tries to use a pipe to communicate with PyMOL. That is possible with "PyMOLWin.exe +2", with "PyMOLWinWithConsole.bat" and with "Scripts\pymol.exe". I suggest that you try this: env pymol="C:\Users...\PyMOLWinWithConsole.bat" Hope that helps. Cheers, Thomas

[PyMOL] Problem with pymol in python 3.6

Hello I am going to work with pymol through python 3.6. When I type (from pymol import cmd) in the jupyter notebook, I get the following error: ModuleNotFoundError: No module named 'pymol' Could you please help me how can I fix the problem? How can I install a version of pymol that is compatible

Re: [PyMOL] Problem with Pymol 2.3.0 with 'undefined symbol: MMTF_unpack_from_string'

Hi Heng-Keat, A "clean" build will probably fix this. It looks like you partially recompiled with --use-msgpackc=no? To do a clean build: Remove the "build" directory and try again. Cheers, Thomas > On Feb 14, 2019, at 8:00 PM, t...@em.uni-frankfurt.de wrote: > > Dear all, > > I installed

[PyMOL] Problem with Pymol 2.3.0 with 'undefined symbol: MMTF_unpack_from_string'

Dear all, I installed the pymol on my machine with Ubuntu 18.04.1 LTS. When I launch pymol and error appears: Traceback (most recent call last): File "/home/mauricetam/Documents/software/pymol-2.3.0//lib/python2.7/site-packages/pymol/__init__.py", line 64, in import pymol File

Re: [PyMOL] Problem with pymol installation

Thanks for the help Christoph, it was my mistake, I had installed the 32bit version of python. Everything worked now and pymol is working properly. Best regards Sergio El 21/3/2016 18:34, "Christoph Gohlke" escribió: > Make sure you are using the 64-bit version of Python 2.7: > python-2.7.11.amd6

Re: [PyMOL] Problem with pymol installation

Make sure you are using the 64-bit version of Python 2.7: python-2.7.11.amd64.msi. If that does not help, please list the contents of %CD%: dir "%CD%"\*.whl Christoph On 3/21/2016 3:31 AM, Bondurant wrote: > Hi everybody, > I recently restored my laptop to factory settings and I am trying now

[PyMOL] Problem with pymol installation

Hi everybody, I recently restored my laptop to factory settings and I am trying now to install latest precompiled pymol version following the instructions from http://www.pymolwiki.org/index.php/Windows_Install. I have installed python 2.7.11 and put in a Pymol_installation folder pip 8.0.3, numpy

[PyMOL] Problem with pymol

Respected Sir, Can I build a model using missing residues through Pymol ? If it is,Please tell me the way. With Regards, SoumiDas-- ___ PyMOL-users mailin

[PyMOL] problem with pymol installation

Dear all I try to run Pymol on windows vista I installed the 1.1 version, but when I launch pymol, I get a big error message I have no plugin installed (I first installed pymol and tried to install some plugin, but I got error messages, so I uninstalled everything and tried to reinstall pymol f

Re: [PyMOL] Problem with pymol installation in ubuntu 8.10

Hi, This line is self explanatory "error: GL/glut.h: No such file or directory". You need to install glut development libraries On Ubuntu you can use apt to install pymol. sudo apt-get install pymol or something similar Marius On Thu, Feb 12, 2009 at 12:52 PM, Abhik Mukhopadhyay wrote: > Dear A

[PyMOL] Problem with pymol installation in ubuntu 8.10

Dear All I am trying to install pymol as described in the pymol wiki. I am experiencing some problems. I am using Ubuntu 8.10 64 bits version in an AMD machine. The last part of the output after the "sudo python setup.py install" was layer0/os_gl.h:69: error: expected ‘)’ before ‘width’ layer0/os

Re: [PyMOL] problem with pymol on FC6

: Wednesday, August 20, 2008 7:45 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] problem with pymol on FC6 Hi all I have recently downloaded the pymol on my FC6. Normally when i install a program, i give a pathname of my program excutable in my .bashrc and then i could launch the program by

[PyMOL] problem with pymol on FC6

Hi all I have recently downloaded the pymol on my FC6. Normally when i install a program, i give a pathname of my program excutable in my .bashrc and then i could launch the program by running "pymol" in a terminal application launcher. But, this time whta happened that after installation i have d

[PyMOL] problem with pymol installation

Hi Pymol-users, I'm trying to install pymol from svn repository. After compiling ( python setup.py build, python setup.py install, python setup2.py install) when I'm running pymol I have such an error OpenGL graphics engine: GL_VENDOR: NVIDIA Corporation GL_RENDERER: GeForce4 MX 440