> -----原始邮件----- > 发件人: pymol-users-requ...@lists.sourceforge.net > 发送时间: 2011年11月10日 星期四 > 收件人: pymol-users@lists.sourceforge.net > 抄送: > 主题: PyMOL-users Digest, Vol 66, Issue 4 > > Send PyMOL-users mailing list submissions to > pymol-users@lists.sourceforge.net > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/pymol-users > or, via email, send a message with subject or body 'help' to > pymol-users-requ...@lists.sourceforge.net > > You can reach the person managing the list at > pymol-users-ow...@lists.sourceforge.net > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of PyMOL-users digest..." > > > Today's Topics: > > 1. Re: Movie to export (Tim Schulte) > 2. CIF support? (Francis E Reyes) > 3. Put scripts in a svn folder (Troels Emtek?r Linnet) > 4. Re: Movie to export (Vitali Stanevich) > 5. Re: Movie to export (Vitali Stanevich) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 9 Nov 2011 15:14:34 +0100 > From: Tim Schulte <tim.schu...@ki.se> > Subject: Re: [PyMOL] Movie to export > To: <pymol-users@lists.sourceforge.net> > Message-ID: <4eba8aca.6030...@ki.se> > Content-Type: text/plain; charset="iso-8859-1" > > Hi, > Quick time player 7 pro does a great job for me. > Cheers > Tim > > Am 11/8/11 9:54 PM, schrieb Troels Emtek?r Linnet: > > Hi. > > > > I have made a nice little movie in Pymol. > > 1500 frames. > > > > So now I am wondering what is the best method to export? > > > > At the moment I do export to .png with ray tracing each image. > > set ray_trace_frames = 1 > > That takes a long time. > > And what program should I use to pack them together? The easy wasy? > > > > Can it be done faster with the MPEG method? > > > > Best > > Troels > > > > Troels Emtek?r Linnet > > Slotsvej 2 > > 4300 Holb?k > > Mobil: +45 60210234 > > > > > > ------------------------------------------------------------------------------ > > RSA(R) Conference 2012 > > Save $700 by Nov 18 > > Register now > > http://p.sf.net/sfu/rsa-sfdev2dev1 > > > > > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > -------------- next part -------------- > An HTML attachment was scrubbed... > > ------------------------------ > > Message: 2 > Date: Wed, 9 Nov 2011 11:45:44 -0700 > From: Francis E Reyes <francis.re...@colorado.edu> > Subject: [PyMOL] CIF support? > To: Pymol List <pymol-users@lists.sourceforge.net> > Message-ID: <73c296ba-cee6-4053-a54f-420e72064...@colorado.edu> > Content-Type: text/plain; charset=us-ascii > > Hi all > > I'm trying to visualize a small molecule . The format is CIF (from SHELX > small molecule refinement). Is there support for this file format? > > Thanks! > > F > > > > --------------------------------------------- > Francis E. Reyes M.Sc. > 215 UCB > University of Colorado at Boulder > > > > > > > > > ------------------------------ > > Message: 3 > Date: Wed, 9 Nov 2011 23:57:11 +0100 > From: Troels Emtek?r Linnet <tlin...@gmail.com> > Subject: [PyMOL] Put scripts in a svn folder > To: "pymol-users@lists.sourceforge.net" > <PyMOL-users@lists.sourceforge.net> > Message-ID: > <ca+cbx2oznwc1cg2nv0h2yv4xjke285jnkvpmyho-o8pbolh...@mail.gmail.com> > Content-Type: text/plain; charset="iso-8859-1" > > Hi Pymolers. > > I sometimes find small errors in my scripts, which I then correct. > But then I get a little "sad", that now my "unfinished" script still lives > "out there". > > So I think, why is the pymolwiki scripts not under subversion control? > > Then authors could push corrections to their scripts to the subversion > directory, > and users would get these corrections. > > I dont know if the pymol wiki could fetch and display the scripts from the > subversion > folder. > > How does this idea sounds? > > Bes > Troels > -------------- next part -------------- > An HTML attachment was scrubbed... > > ------------------------------ > > Message: 4 > Date: Wed, 9 Nov 2011 23:22:09 -0600 > From: Vitali Stanevich <stanev...@wisc.edu> > Subject: Re: [PyMOL] Movie to export > To: pymol-users@lists.sourceforge.net > Message-ID: > <caenuloojshg7ngz_rweb2eb9azcp8micogm+yi0r4y535vc...@mail.gmail.com> > Content-Type: text/plain; charset="iso-8859-1" > > have a look at this link: > http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Morph_with_Chimera > > disregard morph part. you can modify script to contain "frames" instead of > "states". i installed ffmpeg from repositories on ubuntu and don't remember > any issues with kodecs. > > vitali > > On Wed, Nov 9, 2011 at 8:14 AM, Tim Schulte <tim.schu...@ki.se> wrote: > > > ** > > Hi, > > Quick time player 7 pro does a great job for me. > > Cheers > > Tim > > > > Am 11/8/11 9:54 PM, schrieb Troels Emtek?r Linnet: > > > > Hi. > > > > I have made a nice little movie in Pymol. > > 1500 frames. > > > > So now I am wondering what is the best method to export? > > > > At the moment I do export to .png with ray tracing each image. > > set ray_trace_frames = 1 > > That takes a long time. > > And what program should I use to pack them together? The easy wasy? > > > > Can it be done faster with the MPEG method? > > > > Best > > Troels > > > > Troels Emtek?r Linnet > > Slotsvej 2 > > 4300 Holb?k > > Mobil: +45 60210234 > > > > > > ------------------------------------------------------------------------------ > > RSA(R) Conference 2012 > > Save $700 by Nov 18 > > Register nowhttp://p.sf.net/sfu/rsa-sfdev2dev1 > > > > > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > > > > > > ------------------------------------------------------------------------------ > > RSA(R) Conference 2012 > > Save $700 by Nov 18 > > Register now > > http://p.sf.net/sfu/rsa-sfdev2dev1 > > > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > -------------- next part -------------- > An HTML attachment was scrubbed... > > ------------------------------ > > Message: 5 > Date: Wed, 9 Nov 2011 23:29:36 -0600 > From: Vitali Stanevich <stanev...@wisc.edu> > Subject: Re: [PyMOL] Movie to export > To: pymol-users@lists.sourceforge.net > Message-ID: > <CAENULoM6SW8jS+mxm1iz1oQRkS=cVUg=lhoa0dp7gjkov7j...@mail.gmail.com> > Content-Type: text/plain; charset="iso-8859-1" > > one more thing: ffmpeg script at that link didn't work for me so i had to > modify it like that > > ffmpeg -f image2 -qscale 5 -r 24 -b 9600 -i image%d.png movie.mpg > > On Wed, Nov 9, 2011 at 11:22 PM, Vitali Stanevich <stanev...@wisc.edu>wrote: > > > have a look at this link: > > > > http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Morph_with_Chimera > > > > disregard morph part. you can modify script to contain "frames" instead of > > "states". i installed ffmpeg from repositories on ubuntu and don't remember > > any issues with kodecs. > > > > vitali > > > > On Wed, Nov 9, 2011 at 8:14 AM, Tim Schulte <tim.schu...@ki.se> wrote: > > > >> ** > >> Hi, > >> Quick time player 7 pro does a great job for me. > >> Cheers > >> Tim > >> > >> Am 11/8/11 9:54 PM, schrieb Troels Emtek?r Linnet: > >> > >> Hi. > >> > >> I have made a nice little movie in Pymol. > >> 1500 frames. > >> > >> So now I am wondering what is the best method to export? > >> > >> At the moment I do export to .png with ray tracing each image. > >> set ray_trace_frames = 1 > >> That takes a long time. > >> And what program should I use to pack them together? The easy wasy? > >> > >> Can it be done faster with the MPEG method? > >> > >> Best > >> Troels > >> > >> Troels Emtek?r Linnet > >> Slotsvej 2 > >> 4300 Holb?k > >> Mobil: +45 60210234 > >> > >> > >> ------------------------------------------------------------------------------ > >> RSA(R) Conference 2012 > >> Save $700 by Nov 18 > >> Register nowhttp://p.sf.net/sfu/rsa-sfdev2dev1 > >> > >> > >> _______________________________________________ > >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > >> > >> > >> > >> > >> ------------------------------------------------------------------------------ > >> RSA(R) Conference 2012 > >> Save $700 by Nov 18 > >> Register now > >> http://p.sf.net/sfu/rsa-sfdev2dev1 > >> > >> _______________________________________________ > >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > >> > >> > > > -------------- next part -------------- > An HTML attachment was scrubbed... > > ------------------------------ > > ------------------------------------------------------------------------------ > RSA(R) Conference 2012 > Save $700 by Nov 18 > Register now > http://p.sf.net/sfu/rsa-sfdev2dev1 > > ------------------------------ > > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > End of PyMOL-users Digest, Vol 66, Issue 4 > ****************************************** -- <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< Dr. Cheng Liu Key Laboratory of Photosynthesis and Molecular Environmental Physiology, Institute of Botany, CAS "An expert is a man who has made all the mistakes which can be made, in a very narrow field." -- Niels Henrik David Bohr >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ------------------------------------------------------------------------------ RSA(R) Conference 2012 Save $700 by Nov 18 Register now http://p.sf.net/sfu/rsa-sfdev2dev1 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
