Hi Angelo,
instead of calculating RMSD you could monitor pairwise helix angles
over states. See attached script, it depends on the
http://www.pymolwiki.org/index.php/AngleBetweenHelices script.
Cheers,
Thomas
On Thu, Mar 10, 2011 at 12:05 AM, Angelo Rossi
wrote:
> Hello:
>
> I have a protein
Hello:
I have a protein with several helices and believe only one of them (the one
closest to that active center) moves significantly during a simulation.
Can someone suggest a way to use pymol to highlight the movement of the
helices in this protein. I want to select 20 structures from a trajec
