Hi Virasak,
In Pymol you can change the element type to match your needs:
alter n. si, elem="si"
Hope it helps,
Tsjerk
On Tue, Mar 22, 2011 at 2:44 PM, Virasak Dungsrikaew wrote:
> Hi Tsjerk,
>
> You are right. In my work, I almost working with XYZ format and all
> programs that I used is wor
Hi Virasak,
It goes a bit far to call it a bug. It's a problem with the xyz
format. It only has names for atoms, not element types, and Pymol
can't go guessing, otherwise any CA would end up as calcium :S
Cheers,
Tsjerk
On Tue, Mar 22, 2011 at 2:30 PM, Virasak Dungsrikaew wrote:
> Hi Tsjerk,
>
Dear all,
I am using PyMOL 1.2r2 on Ubuntu 10.10.
When I click 'Save Molecule...' from 'File' menu and select a molecule
that contained 'Si' atom, the output pdb will show 'S' instead of 'Si'
on the right most column.
I also try this with mol format, the result is the same.
Is this a known bug or
