Re: [PyMOL] Saving the Connolly surface of a PDB

2011-04-08 Thread Francois Berenger
Jason Vertrees wrote: Hi Francios, Someone recently asked about this and the answer was that this should be a setting, but isn't currently available. If I have time, I'll try to sneak this in the upcoming PyMOL v1.4 release. Is there a workaround for the moment? For example, asking Pymol

Re: [PyMOL] Saving the Connolly surface of a PDB

2011-04-08 Thread Tsjerk Wassenaar
Hi Francois, That information is in the view matrix you get from get_view. The first nine numbers are the rotation matrix R. The next three numbers are the camera position c, followed by the three numbers denoting origin of rotation o. Then to transform your protein coordinates, as in the PDB, to

Re: [PyMOL] Saving the Connolly surface of a PDB

2011-02-27 Thread Jason Vertrees
Hi Francios, Someone recently asked about this and the answer was that this should be a setting, but isn't currently available. If I have time, I'll try to sneak this in the upcoming PyMOL v1.4 release. Cheers, -- Jason On Fri, Feb 25, 2011 at 3:05 AM, Francois Berenger beren...@riken.jp

Re: [PyMOL] Saving the Connolly surface of a PDB

2011-02-27 Thread Francois Berenger
Jason Vertrees wrote: Hi Francios, Someone recently asked about this and the answer was that this should be a setting, but isn't currently available. If I have time, I'll try to sneak this in the upcoming PyMOL v1.4 release. Please, send me an e-mail if it is done some day. Other

[PyMOL] Saving the Connolly surface of a PDB

2011-02-25 Thread Francois Berenger
Hello, Is it possible to save the Connolly surface computed by Pymol without any rotation and translation added compared to the PDB from which the atom coordinates were read? I looked at the .obj file output and find there was some centering done and also some rotation added. Thanks a lot, F.