Re: [PyMOL] Showing the surface

2006-12-19 Thread Andreas Forster
Hi Michael, try to set a low resolution in addition to the increased VdW radii. Play around with the following set of commands: set gaussian_resolution, 9.0 # or whatever looks best map_new mapName, gaussian, 3.0, object # number is separation between grid lines, 1 is way too detailed for low r

[PyMOL] Showing the surface

2006-12-18 Thread Michael Lerner
Hi, I want to show the electrostatic potential surface 10A away from a protein. I used to do this by setting all of the vdw radii to 10A, but I'm wondering if there's a better way these days. The surface I got by altering the vdw radii always looked really choppy and not so smooth. Thank you,