war...@sunesis.com (Warren L. DeLano) writes:
>If someone can find a better open-source surface calculation code, I'd be
>happy to include it in PyMOL as an option. The only catches: it must be
>written in C, and it must be available under a BSD-style open-source
>license (free for commercial use
Hi Dr. Warren!
I know about MSMS license. Indeed, I'm suggesting an approach
similar to what VMD did, i.e., it can link, run and catch results to plot,
all that as a option conditioned to one gets or not MSMS installed,
separately, in one's machine.
Sanner had done and released a
Alan,
Last I checked, MSMS was saddled with a number of constraints on its usage
and redistribution. Though source code can be obtained under certain
conditions, MSMS doesn't meet the minimal "open-source" software
requirements that would make it eligible for inclusion into PyMOL. I
talked with
Hi List!
Dear Dr. Warren, have you consider using MSMS to generate surface
in Pymol, as VMD already does?
Since MSMS can generate a list too, by using another programs, I
could calculate properties to each point in the mesh. So, I wonder,
applying a colour method linked to such p
Raha [mailto:kxr...@psu.edu]
> Sent: Friday, February 07, 2003 4:37 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Surface and SASA
>
>
> Maybe this has already been discussed but I was wondering if the
> surface that PyMOL generates is solvent accessible su
Maybe this has already been discussed but I was wondering if the
surface that PyMOL generates is solvent accessible surface area (SASA)
? If so what is the solvent probe radius? The reason I ask is some
atoms seem to have exposed surfaces when rendered with PyMOL whereas my
SASA program has it
