Re: [PyMOL] Very strange problem

2012-07-27 Thread Jason Vertrees
Hi Martin, Could you point me out to the Python module where the reader is implemented? I would be interested in seeing how PyMOL handles this because I recently had to write something similar. See pymol/modules/pymol/importing.py Look for def load. Cheers, -- Jason On 23.07.12 18:19,

Re: [PyMOL] Very strange problem

2012-07-23 Thread Eric Larson
attachment was scrubbed... -- Message: 5 Date: Fri, 20 Jul 2012 17:44:35 -0500 From: Jason Vertrees jason.vertr...@schrodinger.com Subject: Re: [PyMOL] Very strange problem To: Malai winterho...@gmail.com Cc: pymol-users@lists.sourceforge.net Message-ID

Re: [PyMOL] Very strange problem

2012-07-21 Thread Tsjerk Wassenaar
Hi Malai, Check whether all residues have unique identifiers (residue id + chain id). I often see this happen for multiple chains with no or identical identifiers, in which different residues share the same number. Cheers, Tsjerk On Jul 21, 2012 12:46 AM, Jason Vertrees

[PyMOL] Very strange problem

2012-07-20 Thread Malai
Hi Pymol users, I am using Pymol 1.5.0.0. I tried to cartoon for the complex but Pymol can not assign the cartoon for some parts of complex. When I use some commercial visualizer like MOE and Discovery Studio. It works well. Could you help me what is the problem in the structure or pymol? Many

Re: [PyMOL] Very strange problem

2012-07-20 Thread Jason Vertrees
Hi Malai, What structure? Can we see it? (Feel free to send it to me if you can share it.) Cheers, -- Jason On Fri, Jul 20, 2012 at 3:09 PM, Malai winterho...@gmail.com wrote: Hi Pymol users, I am using Pymol 1.5.0.0. I tried to cartoon for the complex but Pymol can not assign the cartoon